Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015947320.1_cds_XP_016489083.1_79647
CDS Infomation

[gene=LOC107809017] [db_xref=GeneID:107809017] [protein=protein RRP6-like 3 isoform X2] [protein_id=XP_016489083.1] [location=join(112359..112593,112671..112918,112998..113096,113267..113350,113507..113593,115425..115545,116933..117123,117200..117244,118846..119358,120249..120899)] [gbkey=CDS]
Sequence

ATGGAGAACAAGGAAAGTTTGAAGCTTGCTGTTAAGCTCACTATAGCTACTTGCCTCACA
GTAGCCATTTCCATATTCATAGCAAAGAGCTTCCAGAAAGTTCGAAAACACAACAGGAAA
AAGAAACACTCCTGTTATCTAAATGCAGAAATCAAACCTCAAGCTTCATTCAAACGAGTT
TTTGCCGATAACTCATATTCTCAATTCAAACACCTCAAGCTTGTCAACAGCAATGAGGAT
TGTACAAATTTTCATCCGTACAAGGCGGAGATTACGGAGTTGTTGAAGAGTTCAAATGTT
GAATTTTTGGAGCTTTTTGGTAGAAATTTTGAAGATTTGACGATGCGCGAATTGTATGTA
TGGGTTGAGAGTGAGTCTCAATTACGGGAGCTTGCGGAGGTTTTGAGTAAGGAGAGAGTG
TTTGCAGTTGATACAGAGCAGCATAGCTTGAGATCATTTCTCGGCTTCACAGCTCTAATT
CAGATATCAACTGGAAGCGAAGATTATCTTGTGGATACAATAGCTTTGCATGATGTAATG
GGAATTCTTCGGCCCGTATTTGCTAACCCAGGAATTTGCAAGGTATTCCATGGTGCTGAT
AATGATGTTCTTTGGCTTCAAAGGGATTTCCACATTTATGTTGTTAATTTATTTGACACT
GCAAAGGCTTGTGATGTGTTGTCTAAACCACAAAGGTCTTTGGCGTATTTGCTGGATTTG
TACTGTGGCATTGTTGCAAATAAACTATTACAGAGAGAAGACTGGAGGCAACGTCCACTA
CCAGCTGAAATGGTGCAATATGCTCGAACTGATGCACACTATTTGTTGTACATCGCGCAT
CGTCTTTCTTCCGAACTCAAAGAACAGGATACTGAAAATTCATCAAGTCTCAGAGAGGAC
AAATTTAGCTCTGTGCTTGAGGCCAACCGGCGTTCCAATGCAATTTGCTTACAACTTTTC
TCAAAAGAGACTGATGCTTACCCAGGAGAGTCTGTTGCATCATCTATAATCTCTCGTTAT
CAGAGTGATCAAGGAAGTTCCATGTCAAGTTCTGATGAGATGAAGCTTCATGACCTCGTG
AGGCGATTGTGCACTTGGAGAGATATAATGAAATTTGATTGCAGGTATGTCAACCGAAAT
TTGGCGAAACTTATTGAAGAGGACCCTCCTGCTATAATGCTTCTTTTTGAGCCTAAAGGT
CGCCCTGAAGATGAGGGTAATGACTTTTACATTCAAAGTAAGAGAAATATTTGTGTTGGC
TGTGGTGAAGGAAATCACTATTTACGTTATCGAATCATACCTTCATGCTATAGAATGCAC
TTCCCTGAGCATTTAAAGAGCCATCGCTCTCATGACATCGTCCTTCTTTGTGTGGACTGC
CATGAAATTGCTCATGCTGCTGCTGAGAAGTATAAGAGAAAGATAGCTACAGAATTTGGA
ATACCACTTTTTGTTCGTCGAGTAGTTGATTCTAATCAAAATCAGAATACATCAGAGTCA
TCTGTGCCAAAGTTAAGTGTAAAGGACGAAGGAGTATCTCCTTTGCAGTTGCGTACAGCA
GCTATGGCATTGCTACGTCATGGATCTAGAATGCCAGCTAAGCGTCGAGAAGAGTTAATA
ATGATTATCAGGAATTATTATGGTGGACGGGAAATTTCTGATGAAGATCTGGAAAGAGCT
ATGTTAATTGGGATGAGTCCTAATGAGAGAAGGCGATTTGAGAAACAGAGAAAATTAGCT
TGCAAAGGTTCTAATAGAAGTATAACACCAGATGGTGAGCTAGATAATAAGCAAGCAAAA
GGGACATCTCTGCCAGAGGAAGTCTCAGATAACTCGAGCAATAGTGAAGAAAATACCAAT
GTTTTAATAGTAGAGGACAATAATGTTAGCAATCACTCTTCATACCCCAATTTTGGGGTC
AATAGTGAGTACTCTGTTATTCATAAAAATGATTTCCCGCACGGAAGAGAATCCCTAGTG
AAACATGATGATGTTCTTCCGGATTCCTGTGATGATGAAAGCTGTAATGTATCTAATGGA
ATGGCCAATTCTGTTGATAATATGAATACTAATGCATCATCCAAAAACTCGAAGCTCTCG
CTATTAGGGCATGGACCACATGGGAAGCAAGTTGTTAATCATATACTCAACGAGCATGGG
GATGAGGGAATTAGTCAATTTTGTCAGCGATGGAGACAAGTTTTTGTTGAAGCTGTTCAT
CCACGCTTCTTACCTGCTGGCTGGGATATAATGCACAGTGAGGAATCCATTTAA

Peptide Sequence

PEP ID

XP_016489083.1
PEP Infomation

PREDICTED: protein RRP6-like 3 isoform X2 [Nicotiana tabacum]
Sequence

MENKESLKLAVKLTIATCLTVAISIFIAKSFQKVRKHNRKKKHSCYLNAEIKPQASFKRV
FADNSYSQFKHLKLVNSNEDCTNFHPYKAEITELLKSSNVEFLELFGRNFEDLTMRELYV
WVESESQLRELAEVLSKERVFAVDTEQHSLRSFLGFTALIQISTGSEDYLVDTIALHDVM
GILRPVFANPGICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACDVLSKPQRSLAYLLDL
YCGIVANKLLQREDWRQRPLPAEMVQYARTDAHYLLYIAHRLSSELKEQDTENSSSLRED
KFSSVLEANRRSNAICLQLFSKETDAYPGESVASSIISRYQSDQGSSMSSSDEMKLHDLV
RRLCTWRDIMKFDCRYVNRNLAKLIEEDPPAIMLLFEPKGRPEDEGNDFYIQSKRNICVG
CGEGNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIATEFG
IPLFVRRVVDSNQNQNTSESSVPKLSVKDEGVSPLQLRTAAMALLRHGSRMPAKRREELI
MIIRNYYGGREISDEDLERAMLIGMSPNERRRFEKQRKLACKGSNRSITPDGELDNKQAK
GTSLPEEVSDNSSNSEENTNVLIVEDNNVSNHSSYPNFGVNSEYSVIHKNDFPHGRESLV
KHDDVLPDSCDDESCNVSNGMANSVDNMNTNASSKNSKLSLLGHGPHGKQVVNHILNEHG
DEGISQFCQRWRQVFVEAVHPRFLPAGWDIMHSEESI

Transcript Sequence

Gene sequence data has not been registered.